IL_8Y0X_196

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCACUU*AUGCCGAC*AUGCCGAC

Length

23 nucleotides

Bulged bases

8Y0X|1|S2|C|139, 8Y0X|1|S2|C|142

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0X|1|S2|G|130
8Y0X|1|S2|C|139
8Y0X|1|S2|C|140
8Y0X|1|S2|A|141
8Y0X|1|S2|C|142
8Y0X|1|S2|U|143
8Y0X|1|S2|U|144
*
8Y0X|1|S2|A|175
8Y0X|1|S2|U|176
8Y0X|1|S2|G|177
8Y0X|1|S2|C|178
8Y0X|1|S2|C|179
8Y0X|1|S2|G|180
8Y0X|1|S2|A|181
8Y0X|1|S2|C|182
*
8Y0X|1|S2|A|175
8Y0X|1|S2|U|176
8Y0X|1|S2|G|177
8Y0X|1|S2|C|178
8Y0X|1|S2|C|179
8Y0X|1|S2|G|180
8Y0X|1|S2|A|181
8Y0X|1|S2|C|182

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6