3D structure

PDB id
8Y0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dormant ribosome with SERBP1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GCC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Y0X_251 not in the Motif Atlas
Geometric match to IL_5MWI_003
Geometric discrepancy: 0.1261
The information below is about IL_5MWI_003
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8Y0X|1|S2|G|1270
8Y0X|1|S2|C|1271
8Y0X|1|S2|C|1272
*
8Y0X|1|S2|G|1510
8Y0X|1|S2|U|1511
8Y0X|1|S2|C|1512

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SK
40S ribosomal protein S10
Chain SP
40S ribosomal protein S15
Chain Sd
40S ribosomal protein S29

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3391 s