IL_8Y0X_269
3D structure
- PDB id
- 8Y0X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dormant ribosome with SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 8Y0X|1|S2|C|1701, 8Y0X|1|S2|A|1835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0X_269 not in the Motif Atlas
- Homologous match to IL_8C3A_470
- Geometric discrepancy: 0.049
- The information below is about IL_8C3A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8Y0X|1|S2|C|1700
8Y0X|1|S2|C|1701
8Y0X|1|S2|G|1702
*
8Y0X|1|S2|C|1833
8Y0X|1|S2|A|1834
8Y0X|1|S2|A|1835
8Y0X|1|S2|G|1836
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CB
- Elongation factor 2
- Chain S
- Isoform 2 of SERPINE1 mRNA-binding protein 1
- Chain SC
- 40S ribosomal protein S2
- Chain Sa
- 40S ribosomal protein S26
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