3D structure

PDB id
8Y0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dormant ribosome with SERBP1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UGAG*CGAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Y0X_277 not in the Motif Atlas
Homologous match to IL_8C3A_478
Geometric discrepancy: 0.0538
The information below is about IL_8C3A_478
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.13
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

8Y0X|1|S2|U|1733
8Y0X|1|S2|G|1734
8Y0X|1|S2|A|1735
8Y0X|1|S2|G|1736
*
8Y0X|1|S2|C|1798
8Y0X|1|S2|G|1799
8Y0X|1|S2|A|1800
8Y0X|1|S2|A|1801

Current chains

Chain S2
18S rRNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain LW
60S ribosomal protein L24
Chain SG
40S ribosomal protein S6
Chain SI
40S ribosomal protein S8

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.108 s