IL_8Y36_038

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8Y36|1|A|A|1187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y36_038 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0614

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8Y36|1|A|U|1062
8Y36|1|A|U|1063
8Y36|1|A|A|1064
8Y36|1|A|A|1065
8Y36|1|A|G|1066
8Y36|1|A|U|1067
8Y36|1|A|G|1068
*
8Y36|1|A|C|1184
8Y36|1|A|U|1185
8Y36|1|A|A|1186
8Y36|1|A|A|1187
8Y36|1|A|A|1188

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36

Chain H

Large ribosomal subunit protein uL13