IL_8Y36_056

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AAGCGUGCGAUUGGAUUGCACGUC*GGGAGAAGACAUUGUGUCUUCGAGU

Length

49 nucleotides

Bulged bases

8Y36|1|A|A|1497, 8Y36|1|A|U|1498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y36|1|A|A|1488
8Y36|1|A|A|1489
8Y36|1|A|G|1490
8Y36|1|A|C|1491
8Y36|1|A|G|1492
8Y36|1|A|U|1493
8Y36|1|A|G|1494
8Y36|1|A|C|1495
8Y36|1|A|G|1496
8Y36|1|A|A|1497
8Y36|1|A|U|1498
8Y36|1|A|U|1499
8Y36|1|A|G|1500
8Y36|1|A|G|1501
8Y36|1|A|A|1502
8Y36|1|A|U|1503
8Y36|1|A|U|1504
8Y36|1|A|G|1505
8Y36|1|A|C|1506
8Y36|1|A|A|1507
8Y36|1|A|C|1508
8Y36|1|A|G|1509
8Y36|1|A|U|1510
8Y36|1|A|C|1511
*
8Y36|1|A|G|1570
8Y36|1|A|G|1571
8Y36|1|A|G|1572
8Y36|1|A|A|1573
8Y36|1|A|G|1574
8Y36|1|A|A|1575
8Y36|1|A|A|1576
8Y36|1|A|G|1577
8Y36|1|A|A|1578
8Y36|1|A|C|1579
8Y36|1|A|A|1580
8Y36|1|A|U|1581
8Y36|1|A|U|1582
8Y36|1|A|G|1583
8Y36|1|A|U|1584
8Y36|1|A|G|1585
8Y36|1|A|U|1586
8Y36|1|A|C|1587
8Y36|1|A|U|1588
8Y36|1|A|U|1589
8Y36|1|A|C|1590
8Y36|1|A|G|1591
8Y36|1|A|A|1592
8Y36|1|A|G|1593
8Y36|1|A|U|1594

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein bL17