IL_8Y36_065

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

8Y36|1|A|U|1828, 8Y36|1|A|U|1843, 8Y36|1|A|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y36_065 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0736

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8Y36|1|A|U|1825
8Y36|1|A|G|1826
8Y36|1|A|C|1827
8Y36|1|A|U|1828
8Y36|1|A|A|1829
8Y36|1|A|A|1830
8Y36|1|A|A|1831
*
8Y36|1|A|U|1840
8Y36|1|A|G|1841
8Y36|1|A|A|1842
8Y36|1|A|U|1843
8Y36|1|A|G|1844
8Y36|1|A|U|1845
8Y36|1|A|A|1846
8Y36|1|A|U|1847
8Y36|1|A|A|1848

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2