IL_8Y36_069

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y36_069 not in the Motif Atlas

Homologous match to IL_4WF9_073

Geometric discrepancy: 0.2131

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8Y36|1|A|U|1878
8Y36|1|A|U|1879
8Y36|1|A|A|1880
8Y36|1|A|A|1881
8Y36|1|A|G|1882
*
8Y36|1|A|C|1914
8Y36|1|A|G|1915
8Y36|1|A|A|1916
8Y36|1|A|A|1917
8Y36|1|A|G|1918

Current chains

Chain A

23S ribosomal RNA

Nearby chains