IL_8Y36_073
3D structure
- PDB id
- 8Y36 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*CCCG
- Length
- 16 nucleotides
- Bulged bases
- 8Y36|1|A|A|1965, 8Y36|1|A|U|1971
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y36_073 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1458
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
8Y36|1|A|C|1961
8Y36|1|A|G|1962
8Y36|1|A|A|1963
8Y36|1|A|A|1964
8Y36|1|A|A|1965
8Y36|1|A|5MU|1966
8Y36|1|A|U|1967
8Y36|1|A|C|1968
8Y36|1|A|C|1969
8Y36|1|A|U|1970
8Y36|1|A|U|1971
8Y36|1|A|G|1972
*
8Y36|1|A|C|1988
8Y36|1|A|C|1989
8Y36|1|A|C|1990
8Y36|1|A|G|1991
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
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