IL_8Y36_075

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

8Y36|1|A|C|2082, 8Y36|1|A|U|2640, 8Y36|1|A|A|2641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y36_075 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.0855

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

8Y36|1|A|A|2081
8Y36|1|A|C|2082
8Y36|1|A|G|2083
*
8Y36|1|A|C|2639
8Y36|1|A|U|2640
8Y36|1|A|A|2641
8Y36|1|A|U|2642

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain Q

Large ribosomal subunit protein uL22

Chain Z

Large ribosomal subunit protein bL32