IL_8Y36_116

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AUAAUCGUUUUAAUCGAUG*CUAGAUAGAAAAU

Length

32 nucleotides

Bulged bases

8Y36|1|A|A|1450, 8Y36|1|A|U|1454, 8Y36|1|A|U|1464, 8Y36|1|A|A|1635

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y36|1|A|A|1447
8Y36|1|A|U|1448
8Y36|1|A|A|1449
8Y36|1|A|A|1450
8Y36|1|A|U|1451
8Y36|1|A|C|1452
8Y36|1|A|G|1453
8Y36|1|A|U|1454
8Y36|1|A|U|1455
8Y36|1|A|U|1456
8Y36|1|A|U|1457
8Y36|1|A|A|1458
8Y36|1|A|A|1459
8Y36|1|A|U|1460
8Y36|1|A|C|1461
8Y36|1|A|G|1462
8Y36|1|A|A|1463
8Y36|1|A|U|1464
8Y36|1|A|G|1465
*
8Y36|1|A|C|1624
8Y36|1|A|U|1625
8Y36|1|A|A|1626
8Y36|1|A|G|1627
8Y36|1|A|A|1628
8Y36|1|A|U|1629
8Y36|1|A|A|1630
8Y36|1|A|G|1631
8Y36|1|A|A|1632
8Y36|1|A|A|1633
8Y36|1|A|A|1634
8Y36|1|A|A|1635
8Y36|1|A|U|1636

Current chains

Chain A

23S ribosomal RNA

Nearby chains