IL_8Y36_121

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCUUGUACAGGAUAGGUAGGAG*CGCUGGUGGGAUACUACCCUAGC

Length

45 nucleotides

Bulged bases

8Y36|1|A|G|2137, 8Y36|1|A|U|2138, 8Y36|1|A|U|2145, 8Y36|1|A|A|2153, 8Y36|1|A|U|2194, 8Y36|1|A|C|2204, 8Y36|1|A|C|2206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y36|1|A|G|2133
8Y36|1|A|C|2134
8Y36|1|A|U|2135
8Y36|1|A|U|2136
8Y36|1|A|G|2137
8Y36|1|A|U|2138
8Y36|1|A|A|2139
8Y36|1|A|C|2140
8Y36|1|A|A|2141
8Y36|1|A|G|2142
8Y36|1|A|G|2143
8Y36|1|A|A|2144
8Y36|1|A|U|2145
8Y36|1|A|A|2146
8Y36|1|A|G|2147
8Y36|1|A|G|2148
8Y36|1|A|U|2149
8Y36|1|A|A|2150
8Y36|1|A|G|2151
8Y36|1|A|G|2152
8Y36|1|A|A|2153
8Y36|1|A|G|2154
*
8Y36|1|A|C|2188
8Y36|1|A|G|2189
8Y36|1|A|C|2190
8Y36|1|A|U|2191
8Y36|1|A|G|2192
8Y36|1|A|G|2193
8Y36|1|A|U|2194
8Y36|1|A|G|2195
8Y36|1|A|G|2196
8Y36|1|A|G|2197
8Y36|1|A|A|2198
8Y36|1|A|U|2199
8Y36|1|A|A|2200
8Y36|1|A|C|2201
8Y36|1|A|U|2202
8Y36|1|A|A|2203
8Y36|1|A|C|2204
8Y36|1|A|C|2205
8Y36|1|A|C|2206
8Y36|1|A|U|2207
8Y36|1|A|A|2208
8Y36|1|A|G|2209
8Y36|1|A|C|2210

Current chains

Chain A

23S ribosomal RNA

Nearby chains