IL_8Y37_063

3D structure

PDB id

8Y37 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8Y37|1|A|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y37_063 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1033

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8Y37|1|A|C|1730
8Y37|1|A|G|1731
8Y37|1|A|U|1732
8Y37|1|A|A|1733
8Y37|1|A|A|1734
8Y37|1|A|C|1735
*
8Y37|1|A|G|1740
8Y37|1|A|G|1741
8Y37|1|A|A|1742
8Y37|1|A|G|1743
8Y37|1|A|A|1744
8Y37|1|A|A|1745
8Y37|1|A|G|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2