IL_8Y37_065

3D structure

PDB id

8Y37 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

8Y37|1|A|U|1828, 8Y37|1|A|U|1843, 8Y37|1|A|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y37_065 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0952

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8Y37|1|A|U|1825
8Y37|1|A|G|1826
8Y37|1|A|C|1827
8Y37|1|A|U|1828
8Y37|1|A|A|1829
8Y37|1|A|A|1830
8Y37|1|A|A|1831
*
8Y37|1|A|U|1840
8Y37|1|A|G|1841
8Y37|1|A|A|1842
8Y37|1|A|U|1843
8Y37|1|A|G|1844
8Y37|1|A|U|1845
8Y37|1|A|A|1846
8Y37|1|A|U|1847
8Y37|1|A|A|1848

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2