IL_8Y37_104

3D structure

PDB id

8Y37 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y37_104 not in the Motif Atlas

Homologous match to IL_4WF9_101

Geometric discrepancy: 0.1085

The information below is about IL_4WF9_101

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

8Y37|1|A|C|2707
8Y37|1|A|C|2708
8Y37|1|A|U|2709
8Y37|1|A|C|2710
8Y37|1|A|U|2711
*
8Y37|1|A|A|2752
8Y37|1|A|U|2753
8Y37|1|A|G|2754

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain I

Large ribosomal subunit protein uL14

Chain N

Large ribosomal subunit protein bL19