IL_8Y37_127

3D structure

PDB id

8Y37 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GCACAGCUUGUACAGGAUAGGUA*UACCCUAGCUGUGU

Length

37 nucleotides

Bulged bases

8Y37|1|A|A|2132, 8Y37|1|A|U|2138, 8Y37|1|A|C|2140, 8Y37|1|A|U|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y37|1|A|G|2128
8Y37|1|A|C|2129
8Y37|1|A|A|2130
8Y37|1|A|C|2131
8Y37|1|A|A|2132
8Y37|1|A|G|2133
8Y37|1|A|C|2134
8Y37|1|A|U|2135
8Y37|1|A|U|2136
8Y37|1|A|G|2137
8Y37|1|A|U|2138
8Y37|1|A|A|2139
8Y37|1|A|C|2140
8Y37|1|A|A|2141
8Y37|1|A|G|2142
8Y37|1|A|G|2143
8Y37|1|A|A|2144
8Y37|1|A|U|2145
8Y37|1|A|A|2146
8Y37|1|A|G|2147
8Y37|1|A|G|2148
8Y37|1|A|U|2149
8Y37|1|A|A|2150
*
8Y37|1|A|U|2202
8Y37|1|A|A|2203
8Y37|1|A|C|2204
8Y37|1|A|C|2205
8Y37|1|A|C|2206
8Y37|1|A|U|2207
8Y37|1|A|A|2208
8Y37|1|A|G|2209
8Y37|1|A|C|2210
8Y37|1|A|U|2211
8Y37|1|A|G|2212
8Y37|1|A|U|2213
8Y37|1|A|G|2214
8Y37|1|A|U|2215

Current chains

Chain A

23S ribosomal RNA

Nearby chains