IL_8Y38_008

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CUUAGUAG*CGAAAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_008 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.0872

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

8Y38|1|A|C|241
8Y38|1|A|U|242
8Y38|1|A|U|243
8Y38|1|A|A|244
8Y38|1|A|G|245
8Y38|1|A|U|246
8Y38|1|A|A|247
8Y38|1|A|G|248
*
8Y38|1|A|C|256
8Y38|1|A|G|257
8Y38|1|A|A|258
8Y38|1|A|A|259
8Y38|1|A|A|260
8Y38|1|A|U|261
8Y38|1|A|G|262

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL35

Chain J

Large ribosomal subunit protein uL15