IL_8Y38_036

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_036 not in the Motif Atlas

Homologous match to IL_4WF9_034

Geometric discrepancy: 0.1462

The information below is about IL_4WF9_034

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8Y38|1|A|U|915
8Y38|1|A|U|916
8Y38|1|A|U|917
*
8Y38|1|A|A|950
8Y38|1|A|G|951
8Y38|1|A|A|952

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

Large ribosomal subunit protein uL16