IL_8Y38_055
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- UGAGG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y38_055 not in the Motif Atlas
- Homologous match to IL_5J7L_293
- Geometric discrepancy: 0.147
- The information below is about IL_5J7L_293
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8Y38|1|A|U|1394
8Y38|1|A|G|1395
8Y38|1|A|A|1396
8Y38|1|A|G|1397
8Y38|1|A|G|1398
*
8Y38|1|A|C|1407
8Y38|1|A|G|1408
8Y38|1|A|U|1409
8Y38|1|A|A|1410
8Y38|1|A|G|1411
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
- Chain C
- Large ribosomal subunit protein uL2
- Chain V
- Large ribosomal subunit protein bL28
Coloring options: