IL_8Y38_058

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UAAGC*GUGAUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_058 not in the Motif Atlas

Homologous match to IL_4WF9_116

Geometric discrepancy: 0.5597

The information below is about IL_4WF9_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25186.4

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8Y38|1|A|U|1512
8Y38|1|A|A|1513
8Y38|1|A|A|1514
8Y38|1|A|G|1515
8Y38|1|A|C|1516
*
8Y38|1|A|G|1564
8Y38|1|A|U|1565
8Y38|1|A|G|1566
8Y38|1|A|A|1567
8Y38|1|A|U|1568
8Y38|1|A|G|1569

Current chains

Chain A

23S ribosomal RNA

Nearby chains