IL_8Y38_064

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

8Y38|1|A|G|2019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_064 not in the Motif Atlas

Homologous match to IL_5J7L_307

Geometric discrepancy: 0.1082

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8Y38|1|A|A|1713
8Y38|1|A|C|1714
8Y38|1|A|U|1715
8Y38|1|A|C|1716
8Y38|1|A|G|1717
8Y38|1|A|G|1718
*
8Y38|1|A|C|2017
8Y38|1|A|U|2018
8Y38|1|A|G|2019
8Y38|1|A|U|2020

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain I

Large ribosomal subunit protein uL14