IL_8Y38_065
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 8Y38|1|A|G|1743
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y38_065 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.1022
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8Y38|1|A|C|1730
8Y38|1|A|G|1731
8Y38|1|A|U|1732
8Y38|1|A|A|1733
8Y38|1|A|A|1734
8Y38|1|A|C|1735
*
8Y38|1|A|G|1740
8Y38|1|A|G|1741
8Y38|1|A|A|1742
8Y38|1|A|G|1743
8Y38|1|A|A|1744
8Y38|1|A|A|1745
8Y38|1|A|G|1746
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: