IL_8Y38_109

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UU*AUAG

Length

6 nucleotides

Bulged bases

8Y38|1|A|U|2739, 8Y38|1|A|A|2740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_109 not in the Motif Atlas

Homologous match to IL_5J7L_349

Geometric discrepancy: 0.0789

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8Y38|1|A|U|2722
8Y38|1|A|U|2723
*
8Y38|1|A|A|2738
8Y38|1|A|U|2739
8Y38|1|A|A|2740
8Y38|1|A|G|2741

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein bL17

Chain N

Large ribosomal subunit protein bL19