IL_8Y38_113

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_113 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.128

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

8Y38|1|A|U|2867
8Y38|1|A|G|2868
8Y38|1|A|G|2869
8Y38|1|A|A|2870
8Y38|1|A|A|2871
8Y38|1|A|G|2872
*
8Y38|1|A|U|2885
8Y38|1|A|G|2886
8Y38|1|A|G|2887
8Y38|1|A|A|2888
8Y38|1|A|G|2889

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein bL17

Chain N

Large ribosomal subunit protein bL19