IL_8Y38_120

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UCG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_120 not in the Motif Atlas

Homologous match to IL_7A0S_107

Geometric discrepancy: 0.1055

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8Y38|1|B|U|78
8Y38|1|B|C|79
8Y38|1|B|G|80
*
8Y38|1|B|C|91
8Y38|1|B|C|92
8Y38|1|B|G|93

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain K

Large ribosomal subunit protein uL16

Chain T

Large ribosomal subunit protein bL25

Chain X

Large ribosomal subunit protein uL30