IL_8Y38_128

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_128 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.1074

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8Y38|1|a|C|132
8Y38|1|a|U|133
8Y38|1|a|A|134
8Y38|1|a|C|135
8Y38|1|a|C|136
*
8Y38|1|a|G|235
8Y38|1|a|A|236
8Y38|1|a|U|237
8Y38|1|a|G|238

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16

Chain t

Small ribosomal subunit protein bS20