IL_8Y38_132

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CAUUAG*CAACGAUG

Length

14 nucleotides

Bulged bases

8Y38|1|a|U|252, 8Y38|1|a|C|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y38|1|a|C|250
8Y38|1|a|A|251
8Y38|1|a|U|252
8Y38|1|a|U|253
8Y38|1|a|A|254
8Y38|1|a|G|255
*
8Y38|1|a|C|285
8Y38|1|a|A|286
8Y38|1|a|A|287
8Y38|1|a|C|288
8Y38|1|a|G|289
8Y38|1|a|A|290
8Y38|1|a|U|291
8Y38|1|a|G|292

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

Small ribosomal subunit protein uS12

Chain q

Small ribosomal subunit protein uS17