IL_8Y38_139
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- GGAAG*CGGUAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y38_139 not in the Motif Atlas
- Homologous match to IL_4LFB_018
- Geometric discrepancy: 0.2381
- The information below is about IL_4LFB_018
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_82100.1
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
8Y38|1|a|G|454
8Y38|1|a|G|455
8Y38|1|a|A|456
8Y38|1|a|A|457
8Y38|1|a|G|458
*
8Y38|1|a|C|491
8Y38|1|a|G|492
8Y38|1|a|G|493
8Y38|1|a|U|494
8Y38|1|a|A|495
8Y38|1|a|C|496
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain d
- Small ribosomal subunit protein uS4
- Chain p
- Small ribosomal subunit protein bS16
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