IL_8Y38_150

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_150 not in the Motif Atlas

Homologous match to IL_4LFB_027

Geometric discrepancy: 0.175

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

8Y38|1|a|G|662
8Y38|1|a|A|663
*
8Y38|1|a|U|759
8Y38|1|a|G|760
8Y38|1|a|A|761
8Y38|1|a|C|762

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain h

Small ribosomal subunit protein uS8

Chain o

Small ribosomal subunit protein uS15