IL_8Y38_161

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_161 not in the Motif Atlas

Homologous match to IL_5J7L_042

Geometric discrepancy: 0.207

The information below is about IL_5J7L_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

8Y38|1|a|G|962
8Y38|1|a|G|963
*
8Y38|1|a|C|1236
8Y38|1|a|A|1237
8Y38|1|a|C|1238

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

Small ribosomal subunit protein uS9

Chain m

Small ribosomal subunit protein uS13

Chain s

Small ribosomal subunit protein uS19