IL_8Y38_174
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CGAAA*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y38_174 not in the Motif Atlas
- Homologous match to IL_5J7L_056
- Geometric discrepancy: 0.1547
- The information below is about IL_5J7L_056
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8Y38|1|a|C|1269
8Y38|1|a|G|1270
8Y38|1|a|A|1271
8Y38|1|a|A|1272
8Y38|1|a|A|1273
*
8Y38|1|a|U|1282
8Y38|1|a|C|1283
8Y38|1|a|A|1284
8Y38|1|a|A|1285
8Y38|1|a|G|1286
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain s
- Small ribosomal subunit protein uS19
Coloring options: