Loop IL_8Y38

3D structure

PDB id: 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å

Loop

Sequence: CCCAGACAACUAGGAUG*CAUUUAAAGAGUGCGUAAUAGCUCACUAGUCGAG
Length: 51 nucleotides
Bulged bases: 8Y38|1|A|A|1090, 8Y38|1|A|C|1096, 8Y38|1|A|U|1097, 8Y38|1|A|C|1136, 8Y38|1|A|U|1138, 8Y38|1|A|A|1139, 8Y38|1|A|A|1140, 8Y38|1|A|U|1152
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8Y38|1|A|C|1087
8Y38|1|A|C|1088
8Y38|1|A|C|1089
8Y38|1|A|A|1090
8Y38|1|A|G|1091
8Y38|1|A|A|1092
8Y38|1|A|C|1093
8Y38|1|A|A|1094
8Y38|1|A|A|1095
8Y38|1|A|C|1096
8Y38|1|A|U|1097
8Y38|1|A|A|1098
8Y38|1|A|G|1099
8Y38|1|A|G|1100
8Y38|1|A|A|1101
8Y38|1|A|U|1102
8Y38|1|A|G|1103
*
8Y38|1|A|C|1123
8Y38|1|A|A|1124
8Y38|1|A|U|1125
8Y38|1|A|U|1126
8Y38|1|A|U|1127
8Y38|1|A|A|1128
8Y38|1|A|A|1129
8Y38|1|A|A|1130
8Y38|1|A|G|1131
8Y38|1|A|A|1132
8Y38|1|A|G|1133
8Y38|1|A|U|1134
8Y38|1|A|G|1135
8Y38|1|A|C|1136
8Y38|1|A|G|1137
8Y38|1|A|U|1138
8Y38|1|A|A|1139
8Y38|1|A|A|1140
8Y38|1|A|U|1141
8Y38|1|A|A|1142
8Y38|1|A|G|1143
8Y38|1|A|C|1144
8Y38|1|A|U|1145
8Y38|1|A|C|1146
8Y38|1|A|A|1147
8Y38|1|A|C|1148
8Y38|1|A|U|1149
8Y38|1|A|A|1150
8Y38|1|A|G|1151
8Y38|1|A|U|1152
8Y38|1|A|C|1153
8Y38|1|A|G|1154
8Y38|1|A|A|1155
8Y38|1|A|G|1156

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain 4: Large ribosomal subunit protein bL36
Chain G: Large ribosomal subunit protein uL6

IL_8Y38_191