IL_8Y38_192

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

AUAAUCGUUUUAAUCGAUG*CUAGAUAGAAAAU

Length

32 nucleotides

Bulged bases

8Y38|1|A|U|1454, 8Y38|1|A|U|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y38|1|A|A|1447
8Y38|1|A|U|1448
8Y38|1|A|A|1449
8Y38|1|A|A|1450
8Y38|1|A|U|1451
8Y38|1|A|C|1452
8Y38|1|A|G|1453
8Y38|1|A|U|1454
8Y38|1|A|U|1455
8Y38|1|A|U|1456
8Y38|1|A|U|1457
8Y38|1|A|A|1458
8Y38|1|A|A|1459
8Y38|1|A|U|1460
8Y38|1|A|C|1461
8Y38|1|A|G|1462
8Y38|1|A|A|1463
8Y38|1|A|U|1464
8Y38|1|A|G|1465
*
8Y38|1|A|C|1624
8Y38|1|A|U|1625
8Y38|1|A|A|1626
8Y38|1|A|G|1627
8Y38|1|A|A|1628
8Y38|1|A|U|1629
8Y38|1|A|A|1630
8Y38|1|A|G|1631
8Y38|1|A|A|1632
8Y38|1|A|A|1633
8Y38|1|A|A|1634
8Y38|1|A|A|1635
8Y38|1|A|U|1636

Current chains

Chain A

23S ribosomal RNA

Nearby chains