IL_8Y38_197

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GCACAGCUUGUACAGGAUAGGUA*UACCCUAGCUGUGU

Length

37 nucleotides

Bulged bases

8Y38|1|A|A|2132, 8Y38|1|A|U|2138, 8Y38|1|A|C|2140, 8Y38|1|A|U|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y38|1|A|G|2128
8Y38|1|A|C|2129
8Y38|1|A|A|2130
8Y38|1|A|C|2131
8Y38|1|A|A|2132
8Y38|1|A|G|2133
8Y38|1|A|C|2134
8Y38|1|A|U|2135
8Y38|1|A|U|2136
8Y38|1|A|G|2137
8Y38|1|A|U|2138
8Y38|1|A|A|2139
8Y38|1|A|C|2140
8Y38|1|A|A|2141
8Y38|1|A|G|2142
8Y38|1|A|G|2143
8Y38|1|A|A|2144
8Y38|1|A|U|2145
8Y38|1|A|A|2146
8Y38|1|A|G|2147
8Y38|1|A|G|2148
8Y38|1|A|U|2149
8Y38|1|A|A|2150
*
8Y38|1|A|U|2202
8Y38|1|A|A|2203
8Y38|1|A|C|2204
8Y38|1|A|C|2205
8Y38|1|A|C|2206
8Y38|1|A|U|2207
8Y38|1|A|A|2208
8Y38|1|A|G|2209
8Y38|1|A|C|2210
8Y38|1|A|U|2211
8Y38|1|A|G|2212
8Y38|1|A|U|2213
8Y38|1|A|G|2214
8Y38|1|A|U|2215

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain k

Small ribosomal subunit protein uS11