IL_8Y39_008

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUAGUAG*CGAAAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_008 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.0872

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

8Y39|1|A|C|241
8Y39|1|A|U|242
8Y39|1|A|U|243
8Y39|1|A|A|244
8Y39|1|A|G|245
8Y39|1|A|U|246
8Y39|1|A|A|247
8Y39|1|A|G|248
*
8Y39|1|A|C|256
8Y39|1|A|G|257
8Y39|1|A|A|258
8Y39|1|A|A|259
8Y39|1|A|A|260
8Y39|1|A|U|261
8Y39|1|A|G|262

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL35

Chain J

Large ribosomal subunit protein uL15