IL_8Y39_023

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8Y39|1|A|G|846, 8Y39|1|A|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_023 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0972

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

8Y39|1|A|G|719
8Y39|1|A|A|720
8Y39|1|A|A|721
8Y39|1|A|A|722
8Y39|1|A|C|723
*
8Y39|1|A|G|844
8Y39|1|A|A|845
8Y39|1|A|G|846
8Y39|1|A|A|847
8Y39|1|A|U|848
8Y39|1|A|A|849
8Y39|1|A|G|850
8Y39|1|A|C|851

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain J

Large ribosomal subunit protein uL15