IL_8Y39_029

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAG,CUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_029 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.145

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8Y39|1|A|U|867
8Y39|1|A|A|868
8Y39|1|A|G|869
*
8Y39|1|A|C|878
8Y39|1|A|U|879
8Y39|1|A|A|880

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL35

Chain J

Large ribosomal subunit protein uL15

Chain U

Large ribosomal subunit protein bL27