IL_8Y39_052
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGAGUAG*UGAAAUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y39_052 not in the Motif Atlas
- Homologous match to IL_4WF9_048
- Geometric discrepancy: 0.09
- The information below is about IL_4WF9_048
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
8Y39|1|A|G|1300
8Y39|1|A|U|1301
8Y39|1|A|G|1302
8Y39|1|A|A|1303
8Y39|1|A|G|1304
8Y39|1|A|U|1305
8Y39|1|A|A|1306
8Y39|1|A|G|1307
*
8Y39|1|A|U|2038
8Y39|1|A|G|2039
8Y39|1|A|A|2040
8Y39|1|A|A|2041
8Y39|1|A|A|2042
8Y39|1|A|U|2043
8Y39|1|A|C|2044
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL4
- Chain L
- Large ribosomal subunit protein bL17
- Chain Q
- Large ribosomal subunit protein uL22
- Chain Z
- Large ribosomal subunit protein bL32
Coloring options: