IL_8Y39_060

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAG*CUCGUUAAGG

Length

15 nucleotides

Bulged bases

8Y39|1|A|U|1548, 8Y39|1|A|C|1549, 8Y39|1|A|A|1553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y39|1|A|C|1524
8Y39|1|A|U|1525
8Y39|1|A|G|1526
8Y39|1|A|A|1527
8Y39|1|A|G|1528
*
8Y39|1|A|C|1547
8Y39|1|A|U|1548
8Y39|1|A|C|1549
8Y39|1|A|G|1550
8Y39|1|A|U|1551
8Y39|1|A|U|1552
8Y39|1|A|A|1553
8Y39|1|A|A|1554
8Y39|1|A|G|1555
8Y39|1|A|G|1556

Current chains

Chain A

23S ribosomal RNA

Nearby chains