IL_8Y39_064

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

8Y39|1|A|G|2019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_064 not in the Motif Atlas

Geometric match to IL_5J7L_307

Geometric discrepancy: 0.1082

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8Y39|1|A|A|1713
8Y39|1|A|C|1714
8Y39|1|A|U|1715
8Y39|1|A|C|1716
8Y39|1|A|G|1717
8Y39|1|A|G|1718
*
8Y39|1|A|C|2017
8Y39|1|A|U|2018
8Y39|1|A|G|2019
8Y39|1|A|U|2020

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain I

Large ribosomal subunit protein uL14