IL_8Y39_065

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8Y39|1|A|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_065 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.1254

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8Y39|1|A|C|1730
8Y39|1|A|G|1731
8Y39|1|A|U|1732
8Y39|1|A|A|1733
8Y39|1|A|A|1734
8Y39|1|A|C|1735
*
8Y39|1|A|G|1740
8Y39|1|A|G|1741
8Y39|1|A|A|1742
8Y39|1|A|G|1743
8Y39|1|A|A|1744
8Y39|1|A|A|1745
8Y39|1|A|G|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA