IL_8Y39_067

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

8Y39|1|A|U|1828, 8Y39|1|A|U|1843, 8Y39|1|A|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_067 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0952

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8Y39|1|A|U|1825
8Y39|1|A|G|1826
8Y39|1|A|C|1827
8Y39|1|A|U|1828
8Y39|1|A|A|1829
8Y39|1|A|A|1830
8Y39|1|A|A|1831
*
8Y39|1|A|U|1840
8Y39|1|A|G|1841
8Y39|1|A|A|1842
8Y39|1|A|U|1843
8Y39|1|A|G|1844
8Y39|1|A|U|1845
8Y39|1|A|A|1846
8Y39|1|A|U|1847
8Y39|1|A|A|1848

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA