IL_8Y39_071

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_071 not in the Motif Atlas

Homologous match to IL_7A0S_069

Geometric discrepancy: 0.2033

The information below is about IL_7A0S_069

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8Y39|1|A|U|1878
8Y39|1|A|U|1879
8Y39|1|A|A|1880
8Y39|1|A|A|1881
8Y39|1|A|G|1882
*
8Y39|1|A|C|1914
8Y39|1|A|G|1915
8Y39|1|A|A|1916
8Y39|1|A|A|1917
8Y39|1|A|G|1918

Current chains

Chain A

23S ribosomal RNA

Nearby chains