IL_8Y39_082

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAG*CGGG

Length

7 nucleotides

Bulged bases

8Y39|1|A|G|2265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_082 not in the Motif Atlas

Homologous match to IL_7A0S_077

Geometric discrepancy: 0.124

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8Y39|1|A|U|2108
8Y39|1|A|A|2109
8Y39|1|A|G|2110
*
8Y39|1|A|C|2263
8Y39|1|A|G|2264
8Y39|1|A|G|2265
8Y39|1|A|G|2266

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain V

Large ribosomal subunit protein bL28