IL_8Y39_091

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_091 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.0925

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8Y39|1|A|C|2377
8Y39|1|A|G|2378
8Y39|1|A|A|2379
8Y39|1|A|G|2380
*
8Y39|1|A|C|2391
8Y39|1|A|G|2392
8Y39|1|A|A|2393
8Y39|1|A|G|2394

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL35

Chain U

Large ribosomal subunit protein bL27