IL_8Y39_100

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

8Y39|1|A|A|2599, 8Y39|1|A|C|2600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_100 not in the Motif Atlas

Homologous match to IL_5J7L_341

Geometric discrepancy: 0.0883

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8Y39|1|A|C|2539
8Y39|1|A|A|2540
*
8Y39|1|A|U|2598
8Y39|1|A|A|2599
8Y39|1|A|C|2600
8Y39|1|A|G|2601

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain H

Large ribosomal subunit protein uL13