IL_8Y39_138

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAUGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

8Y39|1|a|A|419, 8Y39|1|a|U|420, 8Y39|1|a|G|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y39|1|a|U|417
8Y39|1|a|G|418
8Y39|1|a|A|419
8Y39|1|a|U|420
8Y39|1|a|G|421
8Y39|1|a|A|422
8Y39|1|a|A|423
8Y39|1|a|G|424
*
8Y39|1|a|C|435
8Y39|1|a|G|436
8Y39|1|a|U|437
8Y39|1|a|A|438
8Y39|1|a|A|439
8Y39|1|a|A|440
8Y39|1|a|A|441

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4