IL_8Y39_142

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_142 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.1652

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.2

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

8Y39|1|a|C|512
8Y39|1|a|G|513
8Y39|1|a|G|514
8Y39|1|a|C|515
8Y39|1|a|U|516
8Y39|1|a|A|517
8Y39|1|a|A|518
8Y39|1|a|C|519
*
8Y39|1|a|G|548
8Y39|1|a|G|549

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4

Chain l

Small ribosomal subunit protein uS12