IL_8Y39_144

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8Y39|1|a|A|580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_144 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.1075

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8Y39|1|a|C|577
8Y39|1|a|G|578
8Y39|1|a|U|579
8Y39|1|a|A|580
8Y39|1|a|A|581
8Y39|1|a|A|582
8Y39|1|a|G|583
*
8Y39|1|a|C|889
8Y39|1|a|G|890

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain e

Small ribosomal subunit protein uS5

Chain l

Small ribosomal subunit protein uS12

Chain q

Small ribosomal subunit protein uS17