IL_8Y39_159

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

8Y39|1|a|G|935

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_159 not in the Motif Atlas

Homologous match to IL_6CZR_148

Geometric discrepancy: 0.3252

The information below is about IL_6CZR_148

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

8Y39|1|a|G|934
8Y39|1|a|G|935
8Y39|1|a|G|936
*
8Y39|1|a|U|1400
8Y39|1|a|U|1401

Current chains

Chain a

16S ribosomal RNA

Nearby chains